Monday, July 30, 2007
Thursday, July 19, 2007
DNA Methylation Analysis
DNA methylation analysis: a powerful new tool for lung cancer diagnosis
Department of Biochemistry, University of Southern California, School of Medicine, Norris Comprehensive Cancer Center, NOR 6420, 1441 Eastlake Ave, Los Angeles, California, CA 90089-9176, USA.
Carcinoma of the lung is the most common cause of cancer death worldwide. The estimated 5-year survival ranges from 6-16%, depending on the cell type. The best opportunity for improving survival of lung cancer patients is through early detection, when curative surgical resection is possible. Although the subjects at increased risk for developing carcinoma of the lung (long-term smokers) can be identified, only 10-20% of this group will ultimately develop the disease. Screening tests of long-term smokers employed to date (radiography and sputum cytology) have not been successful in reducing lung cancer mortality. The application of molecular markers specific for lung cancer offers new possibilities for early detection. Hypermethylation of CpG islands in the promoter regions of genes is a common phenomenon in lung cancer, as demonstrated by the analysis of the methylation status of over 40 genes from lung cancer tumors, cell lines, patient sputum and/or serum. Determination of the methylation patterns of multiple genes to obtain complex DNA methylation signatures promises to provide a highly sensitive and specific tool for lung cancer diagnosis. When combined with the development of non-invasive methods to detect such signatures, this may provide a viable method to screen subjects at risk for lung cancer.
PMID: 12154407 [PubMed - indexed for MEDLINE]
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Sunday, July 1, 2007
Human DNA, the Ultimate Spot for Secret Messages
I should say right now that I am not talking about theology or the near theology known as intelligent design. The ability to stick a message in a cockroach does not make us the designers or creators of the cockroach — only evolution could be so kind or clever.
But I’m a sucker for secret messages. Once, long ago, I stayed up all night with my friends playing the Beatles’ “White Album” backward hoping to hear the words “Turn me on dead man,” referring to the rumored death of Paul McCartney. I’m ready to find Slartibartfast’s signature and rediscover my cosmic heritage.
The sad truth is, as others will tell you, this is a bit like writing love letters in the sand. “I don’t buy it,” said Seth Shostak, an astronomer at the SETI Institute in Mountain View, Calif., pointing out that DNA is famously mutable. “Just ask Chuck Darwin,” he added in an e-mail message.-Read More-
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Wednesday, June 27, 2007
RALEIGH, N.C. (AP) A tearful apology from the prosecutor who handled the Duke lacrosse rape case. Mike Nifong (NY'-fawng) also announced that he would step down from his post as Durham County, North Carolina's district attorney. Nifong is facing an ethics trial for withholding critical D-N-A evidence in the case. The three athletes who were accused have since been exonerated.
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Sunday, June 10, 2007
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Monday, June 4, 2007
First Published: 12:23 IST(28/5/2007)
Last Updated: 12:52 IST(28/5/2007)
Latest research by a British scientist shows that a preservative used in cold drinks could switch off vital parts of deoxyribonucleic acid (DNA), causing serious damage to cells particularly in children.
Sodium benzoate or E211 has been used as a preservative for decades by the 74 billion pound global carbonated drinks industry. It is used to kill yeast, bacteria, and fungi in soft drinks, jam, fruit juice and salad dressing. When mixed with vitamin C it forms benzene, a carcinogenic substance. The preservative is also found naturally in cranberries, prunes, greengages, cinnamon, ripe cloves and apples.
Peter Piper, a molecular biology expert at Sheffield University studied the preservative and found it could damage an important part of DNA called mitochondria.
"These chemicals have the ability to cause severe damage to DNA in the mitochondria to the point that they totally inactivate it, they knock it out altogether," said Piper.
"The mitochondria consumes the oxygen to give you energy and if you damage it then the cell starts to malfunction very seriously," he said. "And there is a whole array of diseases now being tied to damage to this part of DNA. Parkinson's and quite a lot of neuro-degenerative diseases, but above all the whole process of ageing can be caused by the damage," added Piper.
However, makers of drinks like Coca-Cola, Fanta and Diet Pepsi insisted that experts had rigorously assessed the additive before it had been approved for use. Coca-Cola said all their ingredients have been approved as safe by the food regulatory authorities in Britain and the European Union (EU), from where they take their guidance.
A spokesman for Britvic, which makes Diet Pepsi said, "We will only use ingredients that are thoroughly tested and approved for use by the Food Standards Agency (FSA) in Britain and approved by the EU." Piper claimed that tests on sodium benzoate carried out by the European Union and the US Food and Drug Administration were too old to be reliable, the online edition of the Daily Mail reported on Sunday.
"By the criteria of modern safety testing, the safety tests were inadequate," he said.
"Like all things, safety testing moves forward and you can conduct a much more rigorous safety test than you could 50 years ago. My concern is for children who are drinking large amounts," said Piper. Norman Baker, the chairman of the British parliament's all-party environment group, endorsed Piper's call for further tests.
"Professor Piper has studied this for some years so we should be taking his concerns seriously. I will be writing to the FSA to ask them to carry out further investigation and I would advise parents to make sure there is no over-exposure to these drinks for their children," said Baker.
In India, the New Delhi based Centre for Science and Environment (CSE) had earlier tested Pepsi and Coca-Cola products and had announced that it found four toxic residues after testing 12 of their major brands.
"Some of these residues were carcinogenic," claimed CSE director Sunita Narain. As a result OF
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Study finds traces of Malathion in samples of softdrinks
A new study has claimed that traces of Malathion, a pesticide, which can have harmful effects on the human brain, were found in certain samples of soft drinks.
The report by Centre for Science and Environment (CSE) on pesticide content in soft drinks said considerable traces of Malathion were found in at least 50 per cent of the samples it collected from the National Capital Region for the study.
"Malathion is a widely used pesticide in urban areas for controlling mosquito's and pests and we have found traces of the pesticide in at least 50 per cent of the samples collected in Delhi and its neighbouring areas," CSE Associate Director Chandra Bhushan said.
The study, Soft Drinks - Hard Truth II, which was released on August 2, also claimed that soft drink samples collected from the NCR contained a "pesticide cocktail" of Lindane, Heptachlor, Chlorpyrosis and Malathion and it was more than 20 times the approved BIS standards.
According to CSE's 2003 study, the average level of pesticide residues in Delhi samples were 34 times above the same BIS standards.
Nine samples of Coca Cola, Fanta, Limca and Thums Up were collected from various parts of the capital during December 2005 and April 2006.
They were produced in Gurgaon's Enrich Agro Food Products and Ghaziabad's Hindustan Coca Cola Beverages and were tested as part of CSE's all-India study, Bhushan said.
Malathion, a chemical inhibitor, is known for hindering transmission of signals to human brain
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Soft drink preservatives could damage children's DNA
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Thursday, May 31, 2007
Monday, May 14, 2007
Friday, May 11, 2007
Effects of the chemotherapy cocktail
Effects of the chemotherapy cocktail used to treattesticular cancer on sperm chromatin integrity.The incidence of testicular cancer has increased dramatically over the past 50 years. Advances in treatment, which include the coadministration of bleomycin, etoposide, and cis-platinum (BEP), have brought the cure rate to over 90%. More...
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